SpatialAI

Five stages, one spatial transcriptomics workflow

Preprocessing
Load, filter, normalize, and integrate raw counts into an analysis-ready dataset.
Annotation
Label cells and spots by type using curated marker gene sets.
Pseudobulk
Aggregate gene expression profiles of individual spots into per-group and per-cell type expression summaries.
Metabolic Analysis
Score metabolic pathway activity across cell types and conditions.
Spatial Region Analysis
Draw and label tissue regions, and compare gene expression across regions.
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